phylogenetics
Note: As pointed out by Dr. Thornton, the build methods described and given below result in the program binary being statically-linked to the
libsequence library.Here is a quick-and-dirty script to convert FASTA files to NEXUS:
SumTrees is a program by myself and Mark T. Holder to summarize non-parameteric bootstrap or Bayesian posterior probability support for splits or clades on phylogenetic trees.
It is part of the DendroPy Python library for phylogenetic computing, and has its home page at:
bootscore is a program that maps non-parametric bootstrap support for nodes/branches on topology (typically a topology resulting from a best tree search on phylogenetic data).
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